All modules for which code is available

• align_traj_on_density
• clustering
• coarse_grained_conop
• colvar
• density_alg
• entity_alg
• file_utilities
• hole
• hydrophobicity
• lipid_analysis
• lipid_order_parameters
• movies
• pbc_utilities
• plot
• principal_components
• secondary_structure
• sequence_alg
• surface_alg
• trajectory_utilities